FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane4_Index14_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 23274863 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 6148340 | 3.010153 | 4.8768654 | 2 |
| CCAGG | 4907685 | 2.5991325 | 5.338411 | 1 |
| CCTGG | 4891860 | 2.5812654 | 6.17818 | 1 |
| GAAGA | 4940750 | 2.5576394 | 5.100403 | 2 |
| CTTCT | 5083100 | 2.5181727 | 5.5879564 | 1 |
| CTGGA | 4689485 | 2.446421 | 8.887749 | 1 |
| TCCAG | 4600915 | 2.3609953 | 5.6829205 | 2 |
| CTGCT | 4585595 | 2.3445177 | 5.0371275 | 1 |
| CTCCT | 4598915 | 2.3129065 | 7.648126 | 1 |
| CTGGG | 4282205 | 2.2971075 | 8.493633 | 1 |
| CAGGA | 4263910 | 2.2325807 | 5.5607576 | 1 |
| CCCAG | 4215750 | 2.1961977 | 7.2721906 | 1 |
| CTTCA | 4407290 | 2.1913996 | 5.65084 | 1 |
| CTCCA | 4326340 | 2.1838176 | 8.1091795 | 1 |
| CAGAA | 4132055 | 2.1040564 | 5.205046 | 1 |
| CTCTG | 4012320 | 2.051414 | 6.240108 | 1 |
| CTGGC | 3572810 | 1.8852485 | 5.43689 | 1 |
| TGGAA | 3608080 | 1.8609277 | 5.2840652 | 2 |
| CTGAA | 3644580 | 1.8490373 | 5.4657574 | 1 |
| CTCAG | 3400585 | 1.7450366 | 6.072991 | 1 |
| CTTTG | 3381615 | 1.7030843 | 5.015934 | 1 |
| CTGGT | 3202670 | 1.6646583 | 5.169319 | 1 |
| CTTGG | 3135590 | 1.629792 | 5.290945 | 1 |